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Abstract Realistic computational simulations in different oceanic basins reveal prevalent prograde mean flows (in the direction of topographic Rossby wave propagation along isobaths; aka topostrophy) on topographic slopes in the deep ocean, consistent with the barotropic theory of eddy-driven mean flows. Attention is focused on the western Mediterranean Sea with strong currents and steep topography. These prograde mean currents induce an opposing bottom drag stress and thus a turbulent boundary layer mean flow in the downhill direction, evidenced by a near-bottom negative mean vertical velocity. The slope-normal profile of diapycnal buoyancy mixing results in downslope mean advection near the bottom (a tendency to locally increase the mean buoyancy) and upslope buoyancy mixing (a tendency to decrease buoyancy) with associated buoyancy fluxes across the mean isopycnal surfaces (diapycnal downwelling). In the upper part of the boundary layer and nearby interior, the diapycnal turbulent buoyancy flux divergence reverses sign (diapycnal upwelling), with upward Eulerian mean buoyancy advection across isopycnal surfaces. These near-slope tendencies abate with further distance from the boundary. An along-isobath mean momentum balance shows an advective acceleration and a bottom-drag retardation of the prograde flow. The eddy buoyancy advection is significant near the slope, and the associated eddy potential energy conversion is negative, consistent with mean vertical shear flow generation for the eddies. This cross-isobath flow structure differs from previous proposals, and a new one-dimensional model is constructed for a topostrophic, stratified, slope bottom boundary layer. The broader issue of the return pathways of the global thermohaline circulation remains open, but the abyssal slope region is likely to play a dominant role. 

Abstract Release of iron (Fe) from continental shelves is a major source of this limiting nutrient for phytoplankton in the open ocean, including productive Eastern Boundary Upwelling Systems. The mechanisms governing the transport and fate of Fe along continental margins remain poorly understood, reflecting interaction of physical and biogeochemical processes that are crudely represented by global ocean biogeochemical models. Here, we use a submesoscale‐permitting physical‐biogeochemical model to investigate processes governing the delivery of shelf‐derived Fe to the open ocean along the northern U.S. West Coast. We find that a significant fraction (∼20%) of the Fe released by sediments on the shelf is transported offshore, fertilizing the broader Northeast Pacific Ocean. This transport is governed by two main pathways that reflect interaction between the wind‐driven ocean circulation and Fe release by low‐oxygen sediments: the first in the surface boundary layer during upwelling events; the second in the bottom boundary layer, associated with pervasive interactions of the poleward California Undercurrent with bottom topography. In the water column interior, transient and standing eddies strengthen offshore transport, counteracting the onshore pull of the mean upwelling circulation. Several hot‐spots of intense Fe delivery to the open ocean are maintained by standing meanders in the mean current and enhanced by transient eddies and seasonal oxygen depletion. Our results highlight the importance of fine‐scale dynamics for the transport of Fe and shelf‐derived elements from continental margins to the open ocean, and the need to improve representation of these processes in biogeochemical models used for climate studies. 

Abstract In Eastern boundary upwelling systems, such as the California Current System (CCS), seasonal upwelling brings low oxygen and low pH waters to the continental shelf, causing ocean acidification and hypoxia (OAH). The location, frequency, and intensity of OAH events is influenced by a combination of large‐scale climatic trends, seasonal changes, small‐scale circulation, and local human activities. Here, we use results from two 20‐year long submesoscale‐resolving simulations of the Northern and Southern U.S. West Coast (USWC) for the 1997–2017 period, to describe the characteristics and drivers of OAH events. These simulations reveal the emergence of hotspots in which seasonal declines in oxygen and pH are accompanied by localized short‐term extremes in OAH. While OAH hotspots show substantial seasonal variability, significant intra‐seasonal fluctuations occur, reflecting the interaction between low‐ and high‐frequency forcings that shape OAH events. The mechanisms behind the seasonal decreases in pH and oxygen vary along the USWC. While remineralization remains the dominant force causing these declines throughout the coast, physical transport partially offsets these effects in Southern and Central California, but contributes to seasonal oxygen loss and acidification on the Northern Coast. Critically, the seasonal decline is not sufficient to predict the occurrence and duration of OAH extremes. Locally enhanced biogeochemical rates, including shallow benthic remineralization and rapid wind‐driven transport, shape the spatial and temporal patterns of coastal OAH. 

Abstract Within oxygen minimum zones, anaerobic processes transform bioavailable nitrogen (N) into the gases dinitrogen (N₂) and nitrous oxide (N₂O), a potent greenhouse gas. Mesoscale eddies in these regions create heterogeneity in dissolved N tracers and O₂concentrations, influencing nonlinear N cycle reactions that depend on them. Here, we use an eddy‐resolving model of the Eastern Tropical South Pacific to show that eddies enhance N₂production by between 43% and 64% at the expense of reducing N₂O production by between 94% and 104% due to both the steep increase of progressive denitrification steps at vanishing oxygen, and the more effective inhibition of N₂O consumption relative to production. Our findings reveal the critical role of eddies in shaping the N cycle of oxygen minimum zones, which is not currently represented by coarse models used for climate studies. 

Abstract Eddies play a crucial role in shaping ocean dynamics by affecting material transport, and generating spatio‐temporal heterogeneity. However, how eddies at different scales modulate biogeochemical transformation rates remains an open question. Applying a multi‐scale decomposition to a numerical simulation, we investigate the respective impact of mesoscale and submesoscale eddies on nutrient transport and biogeochemical cycling in the California Current System. First, the non‐linear nature of nutrient uptake by phytoplankton results in a 50% reduction in primary production in the presence of eddies. Second, eddies shape the vertical transport of nutrients with a strong compensation between mesoscale and submesoscale. Third, the eddy effect on nutrient uptake is controlled by the covariance of temperature, nutrient and phytoplankton fluctuations caused by eddies. Our results shed new light on the tight interaction between non‐linear fluid dynamics and ecosystem processes in realistic eddy regimes, which remain largely under‐resolved by global Earth system models. 

Abstract Oceanic emissions of nitrous oxide (N₂O) account for roughly one‐third of all natural sources to the atmosphere. Hot‐spots of N₂O outgassing occur over oxygen minimum zones (OMZs), where the presence of steep oxygen gradients surrounding anoxic waters leads to enhanced N₂O production from both nitrification and denitrification. However, the relative contributions from these pathways to N₂O production and outgassing in these regions remains poorly constrained, in part due to shared intermediary nitrogen tracers, and the tight coupling of denitrification sources and sinks. To shed light on this problem, we embed a new, mechanistic model of the OMZ nitrogen cycle within a three‐dimensional eddy‐resolving physical‐biogeochemical model of the Eastern Tropical South Pacific (ETSP), tracking contributions from remote advection, atmospheric exchange, and local nitrification and denitrification. The model indicates that net N₂O production from denitrification is approximately one order of magnitude greater than nitrification within the ETSP OMZ. However, only ∼32% of denitrification‐derived N₂O production ultimately outgasses to the atmosphere in this region (contributing ∼36% of the air‐sea N₂O flux on an annual basis), while the remaining is exported out of the domain. Instead, remotely produced N₂O advected into the OMZ region accounts for roughly half (∼57%) of the total N₂O outgassing, with smaller contributions from nitrification (∼7%). Our results suggests that, together with enhanced production by denitrification, upwelling of remotely derived N₂O contributes the most to N₂O outgassing over the ETSP OMZ.